Well like mod Clephas said this feature seems like to be quite annoying, especially if one need time to either thinking or open the walkthrough so that they can answer the choice right in case the timed choice really affected the story. Thankfully though there's no much VNs that apply this feature, which is for good reasons with the few VNs that apply it are usually mystery or thriller like you mentioned above. Oh yes, other than the VNs that you mentioned, according to VNDB Danganronpa and Schoold Days (Also IxShe Tell) also applied this feature, although I don't recall if it's true or not.
That's all for what I can comment in regard of this topic.